Index of Lectures and Materials

Persistent Links

• Persistent Links : Class Meeting, Recordings Folder

Lectures

• Lecture 1 (2021-01-19) : video
  notebooks and materials : Jupyter Overview, Intro to Git, Interactive Git Tutorial

• Lecture 2 (2021-01-21) : video, video part II
  notebooks and materials : Git First Tasks, Intro to the Shell

• Lecture 3 (2021-01-26) : video
  notebooks and materials : Hypothesis Testing (from Hypotheses up to start of Z-test)

• Lecture 4 (2021-01-28) : video, jamboard
  notebooks and materials : HW1-background, SticiGui Interactive Binomial Histogram, Hypothesis Testing (review and Z-test)

• Lecture 5 (2021-02-02) : video, jamboard
  notebooks and materials : Hypothesis Testing (Z-test numerical example), NumPy Style Docstrings

• Lecture 6 (2021-02-04) : video, jamboard
  notebooks and materials : Hypothesis Testing (Numerical Example Continued and Perumation Methods), Hypergeometric Distribution

• Lecture 7 (2021-02-09) : video, jamboard
  notebooks and materials : Pandemics, Tests (Algorithmic Considerations)

• Lecture 8 (2021-02-11) : video, jamboard
  notebooks and materials : Git Branches, Python Testing, Floating Point Arithmetic

• Lecture 9 (2021-02-16) : video, jamboard
  notebooks and materials : Floating Point Arithmetic, Python Testing

• Lecture 10 (2021-02-18) : video, jamboard
  notebooks and materials : Pandemic Model Notebook, IHME Criticism, COVID Time Series Data

• Lecture 11 (2021-02-23) : video, jamboard
  notebooks and materials : Reproducibility, Code Reviews

• Lecture 12 (2021-02-25) : video, jamboard
  notebooks and materials : Reproducibility, Spreadsheet Risks, nbdev, Scientific Collaboration and Project Management in GitHub, Reproducible Applied Statistics Case Study, UC terminates subscriptions with Elsevier, Vox Article - Push for Open Journals, Retraction Watch, Start of PRNGs notebook

• Lecture 13 (2021-03-02) : video, jamboard
  notebooks and materials : PRNGs continued, Laser-based RNG, RSA, Time Capsule Crypto-Puzzle

• Lecture 14 (2021-03-04) : video, jamboard
  notebooks and materials : PRNGs (Sampling, Testing Randomness, Bounds, Bad Shuffles, and Best Practices),
  xkcd Password Generator, Hash Look Up Tables, KeePassX, NumPy RNG Policy, Selective Inference Reading

• Lecture 15 (2021-03-09) : video, jamboard
  notebooks and materials : Selective Inference , ASA’s Statement on p-Values, Many Analysts, One Data Set, xkcd Significance, cryptorandom, Selective Inference Seminar

• Lecture 16 (2021-03-11) : video, jamboard
  notebooks and materials : cryptorandom, Permutation Tests, itertools, Teaching Evals Slides

• Lecture 17 (2021-03-16) : video, jamboard
  notebooks and materials : Permutation Tests, UC Deal with Elsevier, Jupyter History

• Lecture 18 (2021-03-18) : video, jamboard
  notebooks and materials : Git Remote Branches, Intro to Make, DAG

• Lecture 19 (2021-03-30) : video, jamboard
  notebooks and materials : cMake, Invoke, Prefect, Sphinx, reStructuredText, Jupyter Book, MyST Markdown

• Lecture 20 (2021-04-01) : video, jamboard
  notebooks and materials : Confidence Sets, SticiGui CIs

• Lecture 21 (2021-04-06) : video, jamboard
  notebooks and materials : Confidence Sets Continued

• Lecture 22 (2021-04-08) : video, jamboard
  notebooks and materials : Confidence Sets (Binomial CI Example and onward), Numpy Random Sampling, np Random Legacy, Notes on Bootstrap, What Teachers Should Know About the Bootstrap

• Lecture 23 (2021-04-13) : video, jamboard
  notebooks and materials : Confidence Sets Finished, Readings, permute, Regeneron Trial, Binder Slides, mybinder, Binder examples, Try Jupyter, SEP, GW Open Science, LIGO Notebook

• Lecture 24 (2021-04-15) : video, jamboard
  notebooks and materials : Conda environments, Datahub Dockerfile, Mamba, Course Binder

• Lecture 25 (2021-04-20) : video, jamboard
  notebooks and materials : Peng Ding’s Site, Peng Ding Guest Lecture Notes, Exact confidence intervals for the average causal effect on a binary outcome (Li & Ding 2016), arXiv link for Li & Ding, R code for Li & Ding

• Lecture 26 (2021-04-22) : video, jamboard
  notebooks and materials: Containers jamboard, Docker Hub, Ubuntu Images, Storage in Docker, Exporting Conda Envs, Tiny Binder Example, Site Binder

• Lecture 27 (2021-04-27) : video, jamboard
  notebooks and materials: Causal Inference

• Lecture 28 (2021-04-29) : video, jamboard
  notebooks and materials: Causal Inference Continued, HW08, Python Generators, Generators PEP

Labs

• Lab 1 (2021-02-03) : no recording
  notebooks and materials : HW01, Probability Review, Probability, Random Vectors, and Inequalities, Intro to Git, Learn Git Game, Virtual Environments

• Lab 2 (2021-02-10) : video
  notebooks and materials : HW02, Python Testing, Midnight Commander

• Lab 3 (2021-02-17) : video 2PM, video 5PM
  notebooks and materials : HW03, pdb, Magic Commands, Preproducibility

• Lab 4 (2021-02-24) : video 2PM, video 5PM
  notebooks and materials : Functools, Interact, Curve Fitting, What Technologists Can Do About Climate Change

• Lab 5 (2021-03-03) : video 2PM, video 5PM
  notebooks and materials : HW04, Middle-square, SciPy Chisquare, Collections, SciPy RV Continuous

• Lab 6 (2021-03-10) : video 2PM
  notebooks and materials : HW05, False Coverage-Statement Rate, SciPy lognorm, tqdm, Coupon Collector’s Problem

• Lab 7 (2021-03-17) : video 2PM, video 5PM
  notebooks and materials : HW05, SciPy lognorm, Git Branching Model, Virtual Environments, Collaboration and Development Exercise Repo

• Lab 8 (2021-03-31) : video 2PM, video 5PM
  notebooks and materials : Tips for Hw6, pip install, venv, python cmdline, python http.server, Codecov, Codecov yaml

• Lab 9 (2021-04-07) : video 2PM, video 5PM
  notebooks and materials : Repo for Merge Exercise, Merge Conflicts, Syncing a Fork, Git Reset, Forks and Changing Visibility, os, sys, rst

• Lab 10 (2021-04-14) : video 2PM, video 5PM
  notebooks and materials : HW07, scipy minimize, Meld, miniconda, conda-forge, creating conda environments, conda, pip, virtualenv commands, Conda: Myths and Misconceptions, Docker, Docker Hub, Docker Python Tutorial

• Lab 11 (2021-04-21) : video 2pm, video 5pm
  notebooks and materials : HW07, Sterne Binom CIs, Permute Utils, Git Staging, .gitgnore, Docker Examples Repo, Docker Commands Cheat Sheet, DockerHub Image Example (Anaconda)

• Lab 12 (2021-04-28) : video 2PM, video 5pm
  notebooks and materials : HW07, Authorship Contribution Example, Sterne CI Method, Wang Paper : Exact Optimal Confidence Intervals for Hypergeometric Parameters, Wang Method R Implementation, Confidence Coefficients (Wang 2007) Paper, IPython R Magic Extension, R Hypergeometric Docs, SciPy Hypergeom, NumPy Concatenate